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Chapter 3 · Implement Secure Software Development and Compliance·v1.0.0·Updated 8/6/2026·~15 min

What's changed: New GH-100 Chapter 3 (policies & rulesets = govern member capabilities vs enforce on code changes, enterprise cascade, audit log/SIEM streaming, defense in depth; repo security features = enable vulnerability alerts/secret scanning/CodeQL, default config, Dependabot/advisories, response plan/SECURITY.md; API & integrations = fine-grained PAT/least privilege/revocation, GitHub App vs OAuth App, rate limits, app approval/denial)

3.2Repository Security Features

Key points

Understand configuring vulnerability alerts, secret scanning, and CodeQL; managing Dependabot and security advisories; and defining/implementing a security response plan—from an admin’s view.

Admins enable and govern the GHAS (GitHub Advanced Security; GH-500 covers depth) features org-wide and set up the mechanism from detection to response. GH-100 tests, as an admin, configuring features and preparing a response plan for detected issues (deep operations are GH-500’s territory; here it’s admin-view enablement and governance).

3.2.1Vulnerability alerts, secret scanning, and CodeQL

Admins enable, at org/repo level: vulnerability alerts (known dependency vulns, Dependabot-linked), secret scanning (Secret Protection) (detect leaked secrets and Push Protection), and CodeQL (Code Security) (static code analysis). A default security configuration templatizes these for bulk application + inheritance across many repos (shared with GH-500). Public repos are largely free; the full set on private repos needs an Advanced Security license. Since April 2025 it is sold as two productsSecret Protection and Code Security—billed per active committer and available to GitHub Team, not just Enterprise.

3.2.2Dependabot and security advisories

Dependabot detects dependency vulnerabilities and performs security updates (PRs to safe versions) and version updates (detailed in GH-500). Security advisories (GitHub Advisory Database / repository advisories) are the source of vulnerability info; repo admins can fix privately then publish a vulnerability in their own project. Admins enable these org-wide and set up alert recipients/permissions so remediation doesn’t stall.

3.2.3Security response plan

Beyond setting up detection, define a response plan for "who responds, at what priority, by when"—severity criteria (rulesets can enforce severity-based merge protection, but cannot enforce time-based SLAs), roles and ownership (developer/security manager/admin), escalation, and records (dismissal reasons). This ensures alerts are not neglected but reliably remediated. A repo can also publish a SECURITY.md with the vulnerability-reporting procedure (contact, response policy).

Exam point

Common: (1) Admins enable vulnerability alerts / secret scanning (Secret Protection) / CodeQL (Code Security) org-wide; use a default security configuration for bulk apply + inherit. Public=free / private=GHAS license. (2) Dependabot detects dependency vulns + auto PRs; security advisories are the vuln-info source (private fix → publish). (3) Beyond detection, define a response plan (who/priority/SLA/roles/records) to prevent neglect. Publish a SECURITY.md for reporting.

Warning

Watch out: (1) "Enabling" alone isn’t enough—without a response plan and ownership, detections are neglected. (2) Full features on private repos need an Advanced Security license—two products since April 2025 (Secret Protection / Code Security), also available on Team (don’t conflate with public=free). (3) Dependabot security updates (vuln-driven) vs version updates (currency) differ. (4) SECURITY.md publishes a reporting procedure, not detection/remediation itself.

Diagram of secret scanning, CodeQL, Dependabot, and default config.
Detect + response plan (SLA/roles)

3.2.4Section summary

  • Enable vulnerability alerts/secret scanning/CodeQL org-wide; default config for bulk apply + inherit
  • Dependabot detects dependency vulns + auto PRs; security advisories are the source (private fix → publish)
  • Beyond detection, define a response plan (who/priority/SLA/roles/records) to prevent neglect
  • Full features on private repos need Advanced Security (two products: Secret Protection / Code Security, also on Team); publish a SECURITY.md for reporting

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Quick check

(just a quick review)

Q1. An admin wants to bulk-enable vulnerability alerts, secret scanning, and CodeQL across many repos and inherit to future repos. What do you use?

Q2. Which detects known dependency vulnerabilities and auto-creates PRs to safe versions?

Q3. What is generally required to use the full GHAS feature set (secret scanning/CodeQL) on private/enterprise?

Q4. What should an admin prepare so detected security issues aren’t neglected?

Q5. What lets you handle a vulnerability in your own project privately until fixed, then publish?

Q6. Which file publishes a repository’s vulnerability-reporting procedure (contact, response policy)?

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